2024
1 Normalizing flows as an enhanced sampling method for atomistic supercooled liquids
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Machine Learning: Science and Technology
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Machine Learning: Science and Technology
2 Dynamical Facilitation Governs the Equilibration Dynamics of Glasses
Rahul Chacko, François Landes, Giulio Biroli, Olivier Dauchot, Andrea Liu, David Reichman
Physical Review X
Rahul Chacko, François Landes, Giulio Biroli, Olivier Dauchot, Andrea Liu, David Reichman
Physical Review X
3 Large-deviation analysis of rare resonances for the many-body localization transition
Giulio Biroli, Alexander Hartmann, Marco Tarzia
Physical Review B
Giulio Biroli, Alexander Hartmann, Marco Tarzia
Physical Review B
4 The nature of non-phononic excitations in disordered systems
Walter Schirmacher, Matteo Paoluzzi, Felix Cosmin Mocanu, Dmytro Khomenko, Grzegorz Szamel, Francesco Zamponi, Giancarlo Ruocco
Nature Communications
Walter Schirmacher, Matteo Paoluzzi, Felix Cosmin Mocanu, Dmytro Khomenko, Grzegorz Szamel, Francesco Zamponi, Giancarlo Ruocco
Nature Communications
5 Shear-Induced Phase Behavior and Topological Defects in Two-Dimensional Crystals
Federico Ghimenti, Misaki Ozawa, Giulio Biroli, Gilles Tarjus
Physical Review B
Federico Ghimenti, Misaki Ozawa, Giulio Biroli, Gilles Tarjus
Physical Review B
6 Curvature-driven pathways interpolating between stationary points: the case of the pure spherical 3-spin model
Alessandro Pacco, Giulio Biroli, Valentina Ros
Journal of Physics A: Mathematical and Theoretical
Alessandro Pacco, Giulio Biroli, Valentina Ros
Journal of Physics A: Mathematical and Theoretical
7 Dynamic heterogeneity at the experimental glass transition predicted by transferable machine learning
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review B
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review B
8 Interactions and migration rescuing ecological diversity
Giulia Garcia Lorenzana, Ada Altieri, Giulio Biroli
PRX Life
Giulia Garcia Lorenzana, Ada Altieri, Giulio Biroli
PRX Life
9 Overlap renormalization group transformations for disordered systems
Dimitrios Bachtis
Journal of Physics A: Mathematical and Theoretical
Dimitrios Bachtis
Journal of Physics A: Mathematical and Theoretical
10 Ductile-to-brittle transition and yielding in soft amorphous materials: perspectives and open questions
Thibaut Divoux, Elisabeth Agoritsas, Stefano Aime, Catherine Barentin, Jean-Louis Barrat, Roberto Benzi, Ludovic Berthier, Dapeng Bi, Giulio Biroli, Daniel Bonn, Philippe Bourrianne, Mehdi Bouzid, Emanuela del Gado, Hélène Delanoë-Ayari, Kasra Farain, Suzanne Fielding, Matthias Fuchs, Jasper van der Gucht, Silke Henkes, Maziyar Jalaal, Yogesh M Joshi, Anaël Lemaître, Robert L Leheny, Sébastien Manneville, Kirsten Martens, Wilson C K Poon, Marko Popović, Itamar Procaccia, Laurence Ramos, James A Richards, Simon Rogers, Saverio Rossi, Mauro Sbragaglia, Gilles Tarjus, Federico Toschi, Véronique Trappe, Jan Vermant, Matthieu Wyart, Francesco Zamponi, Davoud Zare
Soft Matter
Thibaut Divoux, Elisabeth Agoritsas, Stefano Aime, Catherine Barentin, Jean-Louis Barrat, Roberto Benzi, Ludovic Berthier, Dapeng Bi, Giulio Biroli, Daniel Bonn, Philippe Bourrianne, Mehdi Bouzid, Emanuela del Gado, Hélène Delanoë-Ayari, Kasra Farain, Suzanne Fielding, Matthias Fuchs, Jasper van der Gucht, Silke Henkes, Maziyar Jalaal, Yogesh M Joshi, Anaël Lemaître, Robert L Leheny, Sébastien Manneville, Kirsten Martens, Wilson C K Poon, Marko Popović, Itamar Procaccia, Laurence Ramos, James A Richards, Simon Rogers, Saverio Rossi, Mauro Sbragaglia, Gilles Tarjus, Federico Toschi, Véronique Trappe, Jan Vermant, Matthieu Wyart, Francesco Zamponi, Davoud Zare
Soft Matter
11 Dissecting a miniature universe: A multi-wavelength view of galaxy quenching in the Shapley supercluster
N. Aghanim, T. Tuominen, V. Bonjean, C. Gouin, Tony Bonnaire, M. Einasto
Astronomy & Astrophysics - A&A
N. Aghanim, T. Tuominen, V. Bonjean, C. Gouin, Tony Bonnaire, M. Einasto
Astronomy & Astrophysics - A&A
12 Reducing finite-size effects with reweighted renormalization group transformations
Dimitrios Bachtis
Physical Review E
Dimitrios Bachtis
Physical Review E
13 Inverse Renormalization Group of Disordered Systems
Dimitrios Bachtis
Physical Review B
Dimitrios Bachtis
Physical Review B
2023
14 Far-from-equilibrium criticality in the random-field Ising model with Eshelby interactions
Saverio Rossi, Giulio Biroli, Misaki Ozawa, Gilles Tarjus
Physical Review B
Saverio Rossi, Giulio Biroli, Misaki Ozawa, Gilles Tarjus
Physical Review B
15 Graph-based Approximate Message Passing Iterations
Cédric Gerbelot, Raphaël Berthier
Information and Inference
Cédric Gerbelot, Raphaël Berthier
Information and Inference
16 Finding defects in glasses through machine learning
Simone Ciarella, Dmytro Khomenko, Ludovic Berthier, Felix Mocanu, David Reichman, Camille Scalliet, Francesco Zamponi
Nature Communications
Simone Ciarella, Dmytro Khomenko, Ludovic Berthier, Felix Mocanu, David Reichman, Camille Scalliet, Francesco Zamponi
Nature Communications
17 Multiscale Data-Driven Energy Estimation and Generation
Tanguy Marchand, Misaki Ozawa, Giulio Biroli, Stéphane Mallat
Physical Review X
Tanguy Marchand, Misaki Ozawa, Giulio Biroli, Stéphane Mallat
Physical Review X
18 Fluctuations, bias, variance and ensemble of learners: exact asymptotics for convex losses in high-dimension *
Bruno Loureiro, Cédric Gerbelot, Maria Refinetti, Gabriele Sicuro, Florent Krzakala
Journal of Statistical Mechanics: Theory and Experiment
Bruno Loureiro, Cédric Gerbelot, Maria Refinetti, Gabriele Sicuro, Florent Krzakala
Journal of Statistical Mechanics: Theory and Experiment
19 Generative diffusion in very large dimensions
Giulio Biroli, Marc Mézard
Journal of Statistical Mechanics: Theory and Experiment
Giulio Biroli, Marc Mézard
Journal of Statistical Mechanics: Theory and Experiment
20 Generating configurations of increasing lattice size with machine learning and the inverse renormalization group
Dimitrios Bachtis
Dimitrios Bachtis
21 Dynamical Heterogeneity in Glass-Forming Liquids
Giulio Biroli, Kunimasa Miyazaki, David Reichman
Giulio Biroli, Kunimasa Miyazaki, David Reichman
22 The Kauzmann Transition to an Ideal Glass Phase
Chiara Cammarota, Misaki Ozawa, Gilles Tarjus
Chiara Cammarota, Misaki Ozawa, Gilles Tarjus
23 Quenched complexity of equilibria for asymmetric generalized Lotka–Volterra equations
Valentina Ros, Felix Roy, Giulio Biroli, Guy Bunin
Journal of Physics A: Mathematical and Theoretical
Valentina Ros, Felix Roy, Giulio Biroli, Guy Bunin
Journal of Physics A: Mathematical and Theoretical
24 Scaling Description of Dynamical Heterogeneity and Avalanches of Relaxation in Glass-Forming Liquids
Ali Tahaei, Giulio Biroli, Misaki Ozawa, Marko Popović, Matthieu Wyart
Physical Review X
Ali Tahaei, Giulio Biroli, Misaki Ozawa, Marko Popović, Matthieu Wyart
Physical Review X
25 Predicting Dynamic Heterogeneity in Glass-Forming Liquids by Physics-informed Machine Learning
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review Letters
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review Letters
26 Artificial selection of communities drives the emergence of structured interactions
Jules Fraboul, Giulio Biroli, Silvia de Monte
Journal of Theoretical Biology
Jules Fraboul, Giulio Biroli, Silvia de Monte
Journal of Theoretical Biology
27 Generalized Lotka-Volterra Equations with Random, Nonreciprocal Interactions: The Typical Number of Equilibria
Valentina Ros, Felix Roy, Giulio Biroli, Guy Bunin, Ari M. Turner
Physical Review Letters
Valentina Ros, Felix Roy, Giulio Biroli, Guy Bunin, Ari M. Turner
Physical Review Letters
28 Dynamics of supercooled liquids from static averaged quantities using machine learning
Simone Ciarella, Massimiliano Chiappini, Emanuele Boattini, Marjolein Dijkstra, Liesbeth M C Janssen
Machine Learning: Science and Technology
Simone Ciarella, Massimiliano Chiappini, Emanuele Boattini, Marjolein Dijkstra, Liesbeth M C Janssen
Machine Learning: Science and Technology
29 Elasticity, Facilitation, and Dynamic Heterogeneity in Glass-Forming Liquids
Misaki Ozawa, Giulio Biroli
Physical Review Letters
Misaki Ozawa, Giulio Biroli
Physical Review Letters
30 Evolution of Local Structural Motifs in Colloidal Quantum Dot Semiconductor Nanocrystals Leading to Nanofaceting
Bo Hou, Felix Cosmin Mocanu, Yuljae Cho, Jongchul Lim, Jiangtao Feng, Jingchao Zhang, John Hong, Sangyeon Pak, Jong Bae Park, Young-Woo Lee, Juwon Lee, Byung-Sung Kim, Stephen M Morris, Jung Inn Sohn, Seungnam Cha, Jong Min Kim
Nano Letters
Bo Hou, Felix Cosmin Mocanu, Yuljae Cho, Jongchul Lim, Jiangtao Feng, Jingchao Zhang, John Hong, Sangyeon Pak, Jong Bae Park, Young-Woo Lee, Juwon Lee, Byung-Sung Kim, Stephen M Morris, Jung Inn Sohn, Seungnam Cha, Jong Min Kim
Nano Letters
31 Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems
Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi
Machine Learning: Science and Technology
Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi
Machine Learning: Science and Technology
32 Asymptotic Errors for Teacher-Student Convex Generalized Linear Models (or : How to Prove Kabashima's Replica Formula)
Cedric Gerbelot, Alia Abbara, Florent Krzakala
IEEE Transactions on Information Theory
Cedric Gerbelot, Alia Abbara, Florent Krzakala
IEEE Transactions on Information Theory
33 Microscopic observation of two-level systems in a metallic glass model
Felix Mocanu, Ludovic Berthier, Simone Ciarella, Dmytro Khomenko, David Reichman, Camille Scalliet, Francesco Zamponi
The Journal of Chemical Physics
Felix Mocanu, Ludovic Berthier, Simone Ciarella, Dmytro Khomenko, David Reichman, Camille Scalliet, Francesco Zamponi
The Journal of Chemical Physics
34 Finite-size scaling of the random-field Ising model above the upper critical dimension
Nikolaos G Fytas, Víctor Martín-Mayor, Giorgio Parisi, Marco Picco, Nicolas Sourlas
Physical Review E
Nikolaos G Fytas, Víctor Martín-Mayor, Giorgio Parisi, Marco Picco, Nicolas Sourlas
Physical Review E
35 Bootstrapping traceless symmetric $O(N)$ scalars
Marten Reehorst, Maria Refinetti, Alessandro Vichi
SciPost Physics
Marten Reehorst, Maria Refinetti, Alessandro Vichi
SciPost Physics
36 Dead or alive: Distinguishing active from passive particles using supervised learning (a)
Giulia Janzen, Xander L J A Smeets, Vincent E Debets, Chengjie Luo, Cornelis Storm, Liesbeth M C Janssen, Simone Ciarella
EPL - Europhysics Letters
Giulia Janzen, Xander L J A Smeets, Vincent E Debets, Chengjie Luo, Cornelis Storm, Liesbeth M C Janssen, Simone Ciarella
EPL - Europhysics Letters
37 Creating bulk ultrastable glasses by random particle bonding
Misaki Ozawa, Yasutaka Iwashita, Walter Kob, Francesco Zamponi
Nature Communications
Misaki Ozawa, Yasutaka Iwashita, Walter Kob, Francesco Zamponi
Nature Communications
38 Cosmology with cosmic web environments II. Redshift-space auto and cross power spectra
Tony Bonnaire, Joseph Kuruvilla, Nabila Aghanim, Aurélien Decelle
Astronomy & Astrophysics - A&A
Tony Bonnaire, Joseph Kuruvilla, Nabila Aghanim, Aurélien Decelle
Astronomy & Astrophysics - A&A
2022
39 Finite-Disorder Critical Point in the Yielding Transition of Elastoplastic Models
Saverio Rossi, Giulio Biroli, Misaki Ozawa, Gilles Tarjus, Francesco Zamponi
Physical Review Letters
Saverio Rossi, Giulio Biroli, Misaki Ozawa, Gilles Tarjus, Francesco Zamponi
Physical Review Letters
40 Gradient descent dynamics and the jamming transition in infinite dimensions
Alessandro Manacorda, Francesco Zamponi
Journal of Physics A: Mathematical and Theoretical
Alessandro Manacorda, Francesco Zamponi
Journal of Physics A: Mathematical and Theoretical
41 Equilibrium fluctuations in mean-field disordered models
Giampaolo Folena, Giulio Biroli, Patrick Charbonneau, Yi Hu, Francesco Zamponi
Physical Review E
Giampaolo Folena, Giulio Biroli, Patrick Charbonneau, Yi Hu, Francesco Zamponi
Physical Review E
42 Marginal stability of soft anharmonic mean field spin glasses
Giampaolo Folena, Pierfrancesco Urbani
Journal of Statistical Mechanics: Theory and Experiment
Giampaolo Folena, Pierfrancesco Urbani
Journal of Statistical Mechanics: Theory and Experiment
43 Local Dynamical Heterogeneity in Simple Glass Formers
Giulio Biroli, Patrick Charbonneau, Giampaolo Folena, Yi Hu, Francesco Zamponi
Physical Review Letters
Giulio Biroli, Patrick Charbonneau, Giampaolo Folena, Yi Hu, Francesco Zamponi
Physical Review Letters
44 Glasses and aging: A Statistical Mechanics Perspective
Francesco Arceri, François P. Landes, Ludovic Berthier, Giulio Biroli
Francesco Arceri, François P. Landes, Ludovic Berthier, Giulio Biroli
45 Supervised perceptron learning vs unsupervised Hebbian unlearning: Approaching optimal memory retrieval in Hopfield-like networks
Marco Benedetti, Enrico Ventura, Enzo Marinari, Giancarlo Ruocco, Francesco Zamponi
The Journal of Chemical Physics
Marco Benedetti, Enrico Ventura, Enzo Marinari, Giancarlo Ruocco, Francesco Zamponi
The Journal of Chemical Physics
46 Associative bond swaps in molecular dynamics
Simone Ciarella, Wouter G Ellenbroek
SciPost Physics
Simone Ciarella, Wouter G Ellenbroek
SciPost Physics
47 Author Correction: Efficient generative modeling of protein sequences using simple autoregressive models
Jeanne Trinquier, Guido Uguzzoni, Andrea Pagnani, Francesco Zamponi, Martin Weigt
Nature Communications
Jeanne Trinquier, Guido Uguzzoni, Andrea Pagnani, Francesco Zamponi, Martin Weigt
Nature Communications
48 Modeling sequence-space exploration and emergence of epistatic signals in protein evolution
M Bisardi, J Rodriguez-Rivas, Francesco Zamponi, M Weigt
Molecular Biology and Evolution
M Bisardi, J Rodriguez-Rivas, Francesco Zamponi, M Weigt
Molecular Biology and Evolution
49 Rare events and disorder control the brittle yielding of well-annealed amorphous solids
Misaki Ozawa, Ludovic Berthier, Giulio Biroli, Gilles Tarjus
Physical Review Research
Misaki Ozawa, Ludovic Berthier, Giulio Biroli, Gilles Tarjus
Physical Review Research
2021
50 adabmDCA: adaptive Boltzmann machine learning for biological sequences
Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
BMC Bioinformatics
Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
BMC Bioinformatics