Theoretical neuroscience and biophysics

Publications

Theoretical neuroscience and biophysics

1 Stepwise molecular specification of excitatory synapse diversity onto cerebellar Purkinje cells
Maëla Paul, Séverine Sigoillot, Léa Marti, Francisco Urra Quiroz, Marine Delagrange, Hiu Cheung, David Martinelli, Elie Oriol, Vincent Hakim, Philippe Mailly, Fekrije Selimi
2024 - Nature Neuroscience

2 Continuous Quasi-Attractors dissolve with too much – or too little – variability
Francesca Schönsberg, Rémi Monasson, Alessandro Treves
2024 - PNAS Nexus

3 Physical forces drive C. elegans embryonic deformation
Ting Wang, Martine Ben Amar
2024 - International Journal of Non-Linear Mechanics

4 An indentation method to determine the constitutive parameters of hyperelastic films under large deformation: Theoretical model, experiments and simulations
Haoyuan Che, Martine Ben Amar, Wei Zhu, Shengjun Fan, Jinsong Leng, Fei Jia, Yanju Liu
2024 - International Journal of Solids and Structures

5 Inverse blebs operate as hydraulic pumps during mouse blastocyst formation
Markus F Schliffka, Julien G Dumortier, Diane Pelzer, Arghyadip Mukherjee, Jean-Léon Maître
2024 - Nature Cell Biology

6 Self-organized tissue mechanics underlie embryonic regulation
Paolo Caldarelli, Alexander Chamolly, Aurélien Villedieu, Olinda Alegria-Prévot, Carole Phan, Jerome Gros, Francis Corson
2024 - Nature

7 [∼Re] Exploration in Model-based Reinforcement Learning by Empirically Estimating Learning Progress
Augustin Chartouny, Jean-Pierre Nadal, Mehdi Khamassi
2024 - The ReScience journal

8 The Sphericity Paradox and the Role of Hoop Stresses in Free Subduction on a Sphere
Stéphanie Chaillat, Gianluca Gerardi, Yida Li, Alexander Chamolly, Zhong‐hai Li, Neil M. Ribe
2024 - Journal of Geophysical Research : Solid Earth

9 A two-dimensional vertex model for curvy cell-cell interfaces at the subcellular scale
Kyungeun Kim, J M Schwarz, Martine Ben Amar
2024 - Journal of the Royal Society Interface

10 Long-wavelength traveling waves of vasomotion modulate the perfusion of cortex
Thomas Broggini, Jacob Duckworth, Xiang Ji, Rui Liu, Xinyue Xia, Philipp Mächler, Iftach Shaked, Leon Paul Munting, Satish Iyengar, Michael Kotlikoff, Susanne van Veluw, Massimo Vergassola, Gal Mishne, David Kleinfeld
2024 - Neuron

11 Cyclic muscle contractions reinforce the actomyosin motors and mediate the full elongation of C. elegans embryo
Anna Dai, Martine Ben Amar
2024 - eLife

12 Uncovering multiscale structure in the variability of larval zebrafish navigation
Gautam Sridhar, Massimo Vergassola, João C Marques, Michael B Orger, Antonio Carlos Costa, Claire Wyart
2024 - Proceedings of the National Academy of Sciences of the United States of America

13 Giant organelle vesicles to uncover intracellular membrane mechanics and plasticity
Alexandre Santinho, Maxime Carpentier, Julio Lopes Sampaio, Mohyeddine Omrane, Abdou Rachid Thiam
2024 - Nature Communications

14 Modelling lipid rafts formation through chemo-mechanical interplay triggered by receptor–ligand binding
Chiara Bernard, Angelo Rosario Carotenuto, Nicola Maria Pugno, Massimiliano Fraldi, Luca Deseri
2024 - Biomechanics and Modeling in Mechanobiology

15 Perilipin membrane integration determines lipid droplet heterogeneity in differentiating adipocytes
Mario Majchrzak, Ozren Stojanović, Dalila Ajjaji, Kalthoum Ben M’barek, Mohyeddine Omrane, Abdou Rachid Thiam, Robin Klemm
2024 - Cell Reports

16 Reconstitution of ORP-mediated lipid exchange coupled to PI4P metabolism
Nicolas Fuggetta, Nicola Rigolli, Maud Magdeleine, Amazigh Hamaï, Agnese Seminara, Guillaume Drin
2024 - Proceedings of the National Academy of Sciences of the United States of America

17 Resource-rational account of sequential effects in human prediction
Arthur Prat-Carrabin, Florent Meyniel, Rava Azeredo da Silveira
2024 - eLife

18 Sticky issues in turbulent transport
Antonio Celani, Gautam Reddy, Massimo Vergassola
2024 - Annales Henri Poincaré

19 Optimal policies for Bayesian olfactory search in turbulent flows
R A Heinonen, L Biferale, A Celani, M Vergassola
2023 - Physical Review E

20 Two-fluid dynamics and micron-thin boundary layers shape cytoplasmic flows in early Drosophila embryos
Claudio Hernández-López, Alberto Puliafito, Yitong Xu, Ziqi Lu, Stefano Di Talia, Massimo Vergassola
2023 - Proceedings of the National Academy of Sciences of the United States of America

21 Thermo-aqueous coupling behaviors for shape memory hydrogels: A statistical–mechanical model and simulations faced with experiments
Yunqiang Hu, Chengjun Zeng, Martine Ben Amar, Fei Jia, Yanju Liu, Jinsong Leng
2023 - International Journal of Solids and Structures

22 LC3 conjugation to lipid droplets
Mohyeddine Omrane, Thomas Melia, Abdou Rachid Thiam
2023 - Autophagy

23 Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales
Barbara Schamberger, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P G Castro, Amaia Cipitria, Rhoslyn A Coles, Rumiana Dimova, Michaela Eder, Sebastian Ehrig, Luis M Escudero, Myfanwy E Evans, Paulo R Fernandes, Peter Fratzl, Liesbet Geris, Notburga Gierlinger, Edouard Hannezo, Aleš Iglič, Jacob J K Kirkensgaard, Philip Kollmannsberger, Łucja Kowalewska, Ioannis Papantoniou, Laurent Pieuchot, Tiago H V Pires, Lars D Renner, Andrew O Sageman‐furnas, Gerd E Schröder‐turk, Anupam Sengupta, Vikas R Sharma, Antonio Tagua, Caterina Tomba, Xavier Trepat, Sarah L Waters, Edwina F Yeo, Andreas Roschger, Cécile M Bidan, John W C Dunlop
2023 - Advanced Materials

24 Curvature-Regulated Multiphase Patterns in Tori
Ting Wang, Zhijun Dai, Michel Potier-Ferry, Fan Xu
2023 - Physical Review Letters

25 Metamorphoses of the flow past an obstacle of a resonantly driven bistable polariton fluid
Vincent Hakim, Simon Pigeon, Amandine Aftalion
2023 - Physical Review B

26 Stochasticity and Drug Effects in Dynamical Model for Cancer Stem Cells
Ludovico Mori, Martine Ben Amar
2023 - Cancers

27 A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics
Jennifer S. Goldman, Lionel Kusch, David Aquilue, Bahar Hazal Yalçınkaya, Damien Depannemaecker, Kevin Ancourt, Trang-Anh Nghiem, Viktor Jirsa, Alain Destexhe
2023 - Frontiers in Computational Neuroscience

28 Beta oscillations and waves in motor cortex can be accounted for by the interplay of spatially structured connectivity and fluctuating inputs
Ling Kang, Jonas Ranft, Vincent Hakim
2023 - eLife

29 Application of spin glass ideas in social sciences, economics and finance
Jean Philippe Bouchaud, Matteo Marsili, Jean-Pierre Nadal
2023 -

30 Morphogenesis in space offers challenges and opportunities for soft matter and biophysics
Martine Ben Amar, Pasquale Ciarletta, Pierre A Haas
2023 - Communications Physics

31 HaloTag-based reporters for sparse labeling and cell tracking
Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth
2022 - Fly

32 Minimizing the Elastic Energy of Growing Leaves by Conformal Mapping
Anna Dai, Martine Ben Amar
2022 - Physical Review Letters

33 Manipulating the nature of embryonic mitotic waves
Luke Hayden, Woonyung Hur, Massimo Vergassola, Stefano Di Talia
2022 - Current Biology

34 Alternation emerges as a multi-modal strategy for turbulent odor navigation
Nicola Rigolli, Gautam Reddy, Agnese Seminara, Massimo Vergassola
2022 - eLife

35 Waves in embryonic development
Stefano Di Talia, Massimo Vergassola
2022 - Annual review of biophysics and bioengineering

36 Cullin-5 mutants reveal collective sensing of the nucleocytoplasmic ratio in Drosophila embryogenesis
Luke Hayden, Anna Chao, Victoria E Deneke, Massimo Vergassola, Alberto Puliafito, Stefano Di Talia
2022 - Current Biology

37 ICU Bed Availability Monitoring and analysis in the Grand Est region of France during the COVID-19 epidemic
Consortium Icubam, Laurent Bonnasse-Gahot, Maxime Dénès, Gabriel Dulac-Arnold, Sertan Girgin, François Husson, Valentin Iovene, Julie Josse, Antoine Kimmoun, François Landes, Jean-Pierre Nadal, Romain Primet, Frederico Quintao, Pierre Guillaume Raverdy, Vincent Rouvreau, Olivier Teboul, Roman Yurchak
2022 - Statistique et Société

38 Morpho-elasticity of human pluripotent stem cell cysts
Joseph Ackermann, Philippe J.R. Cohen, Kevin Alessandri, Andrea Leonard, Pierre Nassoy, Jean-François Joanny, Martine Ben Amar
2022 - Journal of the Mechanics and Physics of Solids

39 Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints
Victor Chardès, Massimo Vergassola, Aleksandra Walczak, Thierry Mora
2022 - Proceedings of the National Academy of Sciences of the United States of America

40 Categorical Perception: A Groundwork for Deep Learning
Laurent Bonnasse-Gahot, Jean-Pierre Nadal
2022 - Neural Computation

41 Confidence-controlled Hebbian learning efficiently extracts category membership from stimuli encoded in view of a categorization task
Kevin Berlemont, Jean-Pierre Nadal
2022 - Neural Computation

42 Sector search strategies for odor trail tracking
Gautam Reddy, Boris Shraiman, Massimo Vergassola
2021 - Proceedings of the National Academy of Sciences of the United States of America

43 Fluid mechanics of free subduction on a sphere. Part 1. The axisymmetric case
Alexander Chamolly, Neil M. Ribe
2021 - Journal of Fluid Mechanics

44 Modeling the mechanics of growing epithelia with a bilayer plate theory
Joseph Ackermann, Paul-Qiuyang Qu, Loïc Le Goff, Martine Ben Amar
2021 - The European Physical Journal Plus

45 Machine learning and computational modeling approaches towards detection of pathological activity markers in the cortex
Ivan Lazarevich
2021 - -THESE-

46 Geometry of Gene Regulatory Dynamics
David A Rand, Archishman Raju, Meritxell Sáez, Francis Corson, Eric D Siggia
2021 - Proceedings of the National Academy of Sciences of the United States of America

47 Origin of gradients in lipid density and surface tension between connected lipid droplet and bilayer
Abdou Rachid Thiam, Aymeric Chorlay, Lionel Forêt
2021 - Biophysical Journal

48 Human Inference in Changing Environments with Temporal Structure
Arthur Prat-Carrabin, Robert Wilson, Jonathan Cohen, Rava Azeredo da Silveira
2021 - Psychological Review

49 Multi-cellular aggregates, a model for living matter
Joseph Ackermann, Martine Ben Amar, J.-F. Joanny
2021 - Physics Reports

50 The geometry of information coding in correlated neural populations
Rava Azeredo da Silveira, Fred Rieke
2021 - Annual Review of Neuroscience

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88

Publications

6

Years

Biophysique