2019
101 Dissipation in Non-Steady State Regulatory Circuits
Paulina Szymańska-Rożek, Dario Villamaina, Jacek Miȩkisz, Aleksandra Walczak
Entropy
Paulina Szymańska-Rożek, Dario Villamaina, Jacek Miȩkisz, Aleksandra Walczak
Entropy
102 Can Grid Cell Ensembles Represent Multiple Spaces?
Davide Spalla, Alexis Dubreuil, Sophie Rosay, Remi Monasson, Alessandro Treves
Neural Computation
Davide Spalla, Alexis Dubreuil, Sophie Rosay, Remi Monasson, Alessandro Treves
Neural Computation
103 How many different clonotypes do immune repertoires contain?
Thierry Mora, Aleksandra Walczak
Current Opinion in Systems Biology
Thierry Mora, Aleksandra Walczak
Current Opinion in Systems Biology
104 Physical Limit to Concentration Sensing in a Changing Environment
Thierry Mora, Ilya Nemenman
Physical Review Letters
Thierry Mora, Ilya Nemenman
Physical Review Letters
105 Adaptive cluster expansion for Ising spin models
Simona Cocco, Giancarlo Croce, Francesco Zamponi
The European Physical Journal B: Condensed Matter and Complex Systems
Simona Cocco, Giancarlo Croce, Francesco Zamponi
The European Physical Journal B: Condensed Matter and Complex Systems
106 OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
Zachary Sethna, Yuval Elhanati, Curtis G Callan, Aleksandra M. Walczak, Thierry Mora
Bioinformatics
Zachary Sethna, Yuval Elhanati, Curtis G Callan, Aleksandra M. Walczak, Thierry Mora
Bioinformatics
107 Physique statistique et apprentissage machine : une méthode et trois exemples
Remi Monasson
Remi Monasson
108 Size and structure of the sequence space of repeat proteins
Jacopo Marchi, Ezequiel A Galpern, Rocío Espada, Diego U Ferreiro, Aleksandra M. Walczak, Thierry Mora
PLoS Computational Biology
Jacopo Marchi, Ezequiel A Galpern, Rocío Espada, Diego U Ferreiro, Aleksandra M. Walczak, Thierry Mora
PLoS Computational Biology
109 Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins
Jérôme Tubiana, Simona Cocco, Remi Monasson
Neural Computation
Jérôme Tubiana, Simona Cocco, Remi Monasson
Neural Computation
110 How a well-adapting immune system remembers
Andreas Mayer, Vijay Balasubramanian, Aleksandra M. Walczak, Thierry Mora
Proceedings of the National Academy of Sciences of the United States of America
Andreas Mayer, Vijay Balasubramanian, Aleksandra M. Walczak, Thierry Mora
Proceedings of the National Academy of Sciences of the United States of America
111 Modeling the Correlated Activity of Neural Populations: A Review
Christophe Gardella, Olivier Marre, Thierry Mora
Neural Computation
Christophe Gardella, Olivier Marre, Thierry Mora
Neural Computation
112 Receptor crosstalk improves concentration sensing of multiple ligands
Martín Carballo-Pacheco, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, Thierry Mora
Physical Review E
Martín Carballo-Pacheco, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, Thierry Mora
Physical Review E
113 Learning protein constitutive motifs from sequence data
Jérôme Tubiana, Simona Cocco, Remi Monasson
eLife
Jérôme Tubiana, Simona Cocco, Remi Monasson
eLife
114 Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems
Jacopo Marchi, Michael Lässig, Thierry Mora, Aleksandra M. Walczak
Pathogens
Jacopo Marchi, Michael Lässig, Thierry Mora, Aleksandra M. Walczak
Pathogens
115 Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1
Armita Nourmohammad, Jakub Otwinowski, Marta Łuksza, Thierry Mora, Aleksandra M Walczak
Molecular Biology and Evolution
Armita Nourmohammad, Jakub Otwinowski, Marta Łuksza, Thierry Mora, Aleksandra M Walczak
Molecular Biology and Evolution
116 Genesis of the αβ T-cell receptor
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
PLoS Computational Biology
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
PLoS Computational Biology
117 Three-point functions in the fully packed loop model on the honeycomb lattice
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
Journal of Physics A: Mathematical and Theoretical
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
Journal of Physics A: Mathematical and Theoretical
118 Detecting T cell receptors involved in immune responses from single repertoire snapshots
Mikhail V Pogorelyy, Anastasia Minervina, Mikhail Shugay, Dmitriy Chudakov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
PLoS Biology
Mikhail V Pogorelyy, Anastasia Minervina, Mikhail Shugay, Dmitriy Chudakov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
PLoS Biology
119 Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy
Rhys Adams, Justin Kinney, Aleksandra M Walczak, Thierry Mora
Cell Systems
Rhys Adams, Justin Kinney, Aleksandra M Walczak, Thierry Mora
Cell Systems
120 Cost and benefits of clustered regularly interspaced short palindromic repeats spacer acquisition
Serena Bradde, Thierry Mora, Aleksandra M Walczak
Philosophical Transactions of the Royal Society B: Biological Sciences
Serena Bradde, Thierry Mora, Aleksandra M Walczak
Philosophical Transactions of the Royal Society B: Biological Sciences
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